Genomes
Atlantic salmon
ICSASG_v2
Ssal_v3.1
Ssal_ALTA
Ssal_Brian_v1.0
Rainbow trout
Omyk_1.0
USDA_OmykA_1.1
Dolly Varden
ASM291031v2
Coho salmon
Okis_V1
Okis_V2
Okis_Carlos
Brown trout
fSalTru1.1
Danube salmon
Hhuc_Danny
Northern pike
fEsoLuc1.pri
Eastern mudminnow
UPYG_1.0
Olympic mudminnow
Nhub_Marty
Arctic charr
fSalAlp1.1
Salp_Arthur
European grayling
Tthy_Gary
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Atlantic salmon
Rainbow trout
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Assembly
Annotation source
Ensembl
NCBI
Brown trout
/ Salmo trutta
(NO DESCRIPTION)
Assembly: fSalTru1.1
Accession:
GCA_901001165.1
Genome fasta file
(source: Ensembl)
:
https://ftp.ensembl.org/pub/release-116/fasta/salmo_trutta/dna/Salmo_trutta.fSalTru1.1.dna_sm.toplevel.fa.gz
Annotations
NCBI:
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/901/001/165/GCF_901001165.1_fSalTru1.1/GCF_901001165.1_fSalTru1.1_genomic.gff.gz
Ensembl:
https://ftp.ensembl.org/pub/release-116/gff3/salmo_trutta/Salmo_trutta.fSalTru1.1.116.gff3.gz
Chromosome overview
Click on a chromosome to open the genome browser. Hover on a chromosome for info (e.g. refseq or genbank accessions). You can download chromosome info as a table
here
Synteny blocks
Outer track indicates rediploidisation timing
Based on gene tree phylogeny.
Download the synteny blocks data