Nextflow workflow report

[happy_swanson] (resumed run)

Workflow execution completed successfully!
Run times
18-Sep-2026 19:49:57 - 19-Sep-2026 04:57:05 (duration: 9h 7m 8s)
  17 succeeded  
  1358 cached  
  0 ignored  
  0 failed (1 retries)  
Nextflow command
nextflow run . -profile slurm,apptainer -process.queue=orion -c pipeline_runs/2026-09/no_seqera.config -params-file pipeline_runs/2026-09/salmonid_7v.yaml --account biovit_elixir -w /mnt/SCRATCH/lagr/salmonid_synteny_2026-09/work --outdir /mnt/project/ELIXIR/salmobase/datafiles/orthology/2026-09 --pre_downloaded_input_dir /mnt/SCRATCH/lagr/salmonid_synteny_2026-09/input_cache -resume 30dc172e-eaaf-4e64-a13e-6260367ed30a
CPU-Hours
7'793.0 (99.5% cached, 0% failed)
Launch directory
/net/fs-2/scale/OrionStore/Home/lagr/gitlab/sandve-lab/salmonid_synteny
Work directory
/mnt/SCRATCH/lagr/salmonid_synteny_2026-09/work
Project directory
/net/fs-2/scale/OrionStore/Home/lagr/gitlab/sandve-lab/salmonid_synteny
Script name
main.nf
Script ID
add79a8d827ab3045efe5dc435df2d92
Workflow name
salmonid_synteny
Workflow version
3.0.0
Workflow description
Orthology and synteny/ohnolog prediction across salmonid genomes
Workflow author
Sandve lab
Workflow home page
https://github.com/sandve-lab/salmonid_synteny
Workflow session
30dc172e-eaaf-4e64-a13e-6260367ed30a
Workflow profile
slurm,apptainer
Workflow container
docker.io/larsgr/salmonid-synteny:3.0.0
Container engine
apptainer
Nextflow version
version 26.04.6, build 12646 (09-07-2026 18:49 UTC)

Resource Usage

These plots give an overview of the distribution of resource usage for each process.

CPU

Memory

Job Duration

I/O

Tasks

This table shows information about each task in the workflow. Use the search box on the right to filter rows for specific values. Clicking headers will sort the table by that value and scrolling side to side will reveal more columns.

(tasks table omitted because the dataset is too big)