Your input:


Table 1: Genes information

Table 2: Predicted motifs

Plot 1: Motif distance from TSS (0)

Your input:

Table 1: Matched TFs

Table 2: Predicted genes for the selected TFs

*Binding domain similarity between TFs protein and the selected species gene protein sequence determined after each pair of sequence is blasted using deltablast software against NCBI conserved domain database (CDD)
Your input:

Table 1: Matched motifs

Matched TFs

Table 2: Target genes for the selected motifs

Your input:

Table 1: Genes in specific region

Table 2: Predicted motifs for the selected genes

Your input:

Table 1: Genes in gene set

Table 2: Most enriched motif for each motif cluster

Table 3: Target genes for selected motif

Plot 1: Distribution of hypergeometric test P-value

Plot 2: Selected genes network via shared TFs

Plot 3: Top 10 enriched motifs

SalMotifDB R Package

We have made an R package which accesses the SalMotifDB database. If you would like to integrate our database in your scripts or contribute to improve it. Please request access to the repository

SalMotifDB-shiny R Package

You can download the shiny app scripts if you would like to run it in your own environment or contribute to improve it. Please request access to the repository